running sge jobs as user nobody
- From: "Botka, Christopher" <Christopher.Botka (at) joslin.harvard.edu>
- Date: Wed, 22 Mar 2006 08:33:31 -0500
Are you sure user nobody has the same UID across all the execute hosts?
This is similar, IIRC to the error I got when I had a uid conflict.
CB
> -----Original Message-----
> From:
> bioclusters-bounces+christopher.botka=joslin.harvard.edu (at) bioin
formatics.org [mailto:bioclusters->
bounces+christopher.botka=joslin.harvard.edu (at) bioinformatics.or
> g] On Behalf Of Jinal Jhaveri
> Sent: Tuesday, March 21, 2006 9:27 PM
> To: bioclusters (at) bioinformatics.org
> Subject: [Bioclusters] running sge jobs as user nobody
>
> Sorry for cross-posting but I saw a related talk about this
> issue on this list before so am I am posting it here. Has
> anybody successfully ran SGE jobs as user nobody? I am
> getting "can't chdir to /nonexistent: No such file or
> directory"error. It seems like qsub command is looking for
> the user's homedir, and nobody's home dir is /nonexistent and
> thus it generates this error.
> I am using -cwd and -o /tmp/x.out and -e /tmp/x.out options
> Apart from "running it as a regular user" any other suggestions?
>
> Thank you
> --Jinal
>
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